![]() This workflow allows to register slides with transformations which are more complex than affine transform, by using the ImgLib2 library, elastix, and BigWarp. If you'd like to share an idea or project, please share them with the community. This page documents a way to register whole slide images in Fiji and analyze their result in QuPath. Individuals at many other institutions worldwide.įiji is an open source project, so everybody is welcome to contribute with plugins, patches, bug reports, tutorials, documentation, and artwork. Difficulty using ImageJ 3D Viewer for landmark study.The Saalfeld Lab at Janelia Research Campus.The Tomancak and Jug labs at MPI-CBG and the CSBD.The Eliceiri/LOCI lab at UW-Madison, home of ImageJ2.Plugins and other components have their own licenses.įiji is supported by several laboratories and institutions: See the Fiji Downloads page for Life-Line versions, etc.įiji is released as open source under the GNU General Public License.įiji builds on top of the ImageJ2 core, which is licensed under the permissive BSD 2-Clause license. The Fiji distribution of ImageJ has several nice tools for that, including: Align Image by line ROI (simple/easy/quick) Landmark Correspondences and BUnwarpJ (fancier) TrakEM2 (powerful heavy-duty solution) StackReg is also popular See the Fiji wiki for other options, too. Option 3: Associate shortcut to a plugin menu entry. This option is more convenient to distribute macros with keyboard shortcuts to colleagues or via an update site. This will install your macros and thus activate the associated shortcuts. Error creating thumbnail: Unable to save thumbnail to destination Then restart ImageJ/Fiji and click the > at the rightmost side of the fiji toolbar and click the entry MyShortcut.
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